| Winner: | A Deepness in the Sky by Vernor Vinge [Tor, 1999] |
| 2 | A Civil Campaign by Lois McMaster Bujold [Baen, 1999] |
| 3 | Cryptonomicon by Neal Stephenson [Avon, 1999] |
| 4 | Darwin's Radio by Greg Bear [HarperCollins UK, 1999; Ballantine Del Rey, 1999] |
| 5 | Harry Potter and the Prisoner of Azkaban by J. K. Rowling [Bloomsbury, 1999; Scholastic, 1999] |
| Winner: | "The Winds of Marble Arch" by Connie Willis [Asimov's Oct/Nov 1999] |
| 2 | "Forty, Counting Down" by Harry Turtledove [Asimov's Dec 1999] |
| 3 | "The Astronaut from Wyoming" by Adam-Troy Castro and Jerry Oltion [Analog Jul/Aug 1999] |
| 4 | "Hunting the Snark" by Mike Resnick [Asimov's Dec 1999] |
| 5 | "Son, Observe the Time" by Kage Baker [Asimov's May 1999] |
| Winner: | "1016 to 1" by James Patrick Kelly [Asimov's Jun 1999] |
| 2 | "Stellar Harvest" by Eleanor Arnason [Asimov's Apr 1999] |
| 3 | "Border Guards" by Greg Egan [Interzone #148 Oct 1999] |
| 4 | "The Secret History of the Ornithopter" by Jan Lars Jensen [F&SF; Jun 1999] |
| 5 | "Fossil Games" by Tom Purdom [Asimov's Feb 1999] |
| 6 | "The Chop Girl" by Ian R. MacLeod [Asimov's Dec 1999] |
| Winner: | "Scherzo with Tyrannosaur" by Michael Swanwick [Asimov's Jul 1999] |
| 2 | "Ancient Engines" by Michael Swanwick [Asimov's Feb 1999] |
| 3 | "Hothouse Flowers" by Mike Resnick [Asimov's Oct/Nov 1999] |
| 4 | "macs" by Terry Bisson [F&SF; Oct/Nov 1999] |
| 5 | "Sarajevo" by Nick DiChario [F&SF; Mar 1999] |
| Winner: | Science Fiction of the 20th Century by Frank M. Robinson [Collector's Press, 1999] |
| 2 | The Sandman: The Dream Hunters by Neil Gaiman and Yoshitaka Amano [DC/Vertigo, 1999] |
| 3 | The Science of Discworld by Terry Pratchett, Ian Stewart and Jack Cohen [Ebury Press, 1999] |
| 4 | Spectrum 6: The Best in Contemporary Fantastic Art by Cathy Fenner, Arnie Fenner and Jim Loehr [Underwood Books, 1999] |
| 5 | Minicon 34 Restaurant Guide by Karen Cooper and Bruce Schneier [Rune Press, 1999] |
| Winner: | Galaxy Quest (1999) [DreamWorks SKG] Screenplay by David Howard and Robert Gordon; Directed by Dean Parisot; Story by David Howard |
| 2 | The Matrix (1999) [Silver] Written by Andy Wachowski & Larry Wachowski; Directed by Andy Wachowski and Larry Wachowski |
| 3 | The Sixth Sense (1999) [Hollywood/Spyglass/Kennedy/Marshall] Written by M. Night Shyamalan; Directed by M. Night Shyamalan |
| 4 | Being John Malkovich (1999) [Gramercy/Propaganda/Single Cell] Written by Charlie Kaufmann; Directed by Spike Jonze |
| 5 | The Iron Giant (1999) [Warner Brothers] Screenplay by Tim McCanlies; Directed by Brad Bird; Screen Story by Brad Bird; based on the book The Iron Man by Ted Hughes |
| Winner: | Gardner Dozois |
| 2 | Stanley Schmidt |
| 3 | David G. Hartwell |
| 4 | Patrick Nielsen Hayden |
| 5 | Gordon Van Gelder |
| Winner: | Michael Whelan |
| 2 | Bob Eggleton |
| 3 | Don Maitz |
| 4 | Jim Burns |
| 5 | Donato Giancola |
| Winner: | Locus ed. by Charles N. Brown |
| 2 | Interzone ed. by David Pringle |
| 3 | Science Fiction Chronicle ed. by Andrew I. Porter |
| 4 | The New York Review of Science Fiction ed. by Kathryn Cramer, Ariel Haméon, David G. Hartwell and Kevin J. Maroney |
| 5 | Speculations ed. by Kent Brewster |
| Winner: | File 770 ed. by Mike Glyer |
| 2 | Mimosa ed. by Nicki Lynch and Richard Lynch |
| 3 | Ansible ed. by Dave Langford |
| 4 | Plokta ed. by Alison Scott, Steve Davies and Mike Scott |
| 5 | Challenger ed. by Guy H. Lillian III |
| Winner: | Dave Langford |
| 2 | Mike Glyer |
| 3 | Evelyn C. Leeper |
| 4 | Steven H Silver |
| 5 | Bob Devney |
| Winner: | Joe Mayhew |
| 2 | Teddy Harvia |
| 3 | Brad W. Foster |
| 4 | Freddie Baer |
| 5 | Taral Wayne |
| Winner: | Cory Doctorow (2nd year of eligibility) |
| 2 | Ellen Klages (2nd year of eligibility) |
| 3 | Shane Tourtellotte (2nd year of eligibility) |
| 4 | Kristine Smith (1st year of eligibility) |
| 5 | Thomas Harlan (1st year of eligibility) |
Index:
1946 || 1951 || 1953 || 1954 || 1955 || 1956 || 1957 || 1958 || 1959 || 1960 || 1961 || 1962 || 1963 || 1964 || 1965 || 1966
1967 || 1968 || 1969 || 1970 || 1971 || 1972 || 1973 || 1974 || 1975 || 1976 || 1977 || 1978 || 1979 || 1980 || 1981 || 1982
1983 || 1984 || 1985 || 1986 || 1987 || 1988 || 1989 || 1990 || 1991 || 1992 || 1993 || 1994 || 1995 || 1996 || 1997 || 1998
1999 || 2000 || 2001 || 2002 || 2003 || 2004 || 2005 || 2006 || 2007 || 2008